Publications

Guillaume Devailly, Anagha Joshi (2021). Comprehensive analysis of epigenetic signatures of human transcription control. In: Molecular Omics, (17), 5, pp. 692–705, https://doi.org/10.1039/d0mo00130a.

Preprint Project

Mahmood F. Bhutta, Jane Lambie, Lindsey Hobson, Debbie Williams, Hayley E. Tyrer, George Nicholson, Steve D. M. Brown, Helen Brown, Chiara Piccinelli, Guillaume Devailly, James Ramsden, Michael T. Cheeseman (2019). Transcript Analysis Reveals a Hypoxic Inflammatory Environment in Human Chronic Otitis Media With Effusion. In: Frontiers in Genetics, (10), pp. 1327, https://doi.org/10.3389/fgene.2019.01327.

Angeles Arzalluz-Luque, Guillaume Devailly, Anagha Joshi (2018). scFeatureFilter: Correlation-Based Feature Filtering for Single-Cell RNAseq. In: Bioinformatics and Biomedical Engineering, Springer International Publishing, Cham, pp. 364–370.

Guillaume Devailly, Anagha Joshi (2018). Insights into mammalian transcription control by systematic analysis of ChIP sequencing data. In: BMC bioinformatics, (19), Suppl 14, pp. 409, https://doi.org/10.1186/s12859-018-2377-x.

Anna Mantsoki, Guillaume Devailly, Anagha Joshi (2018). Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells. In: BMC developmental biology, (18), 1, pp. 2, https://doi.org/10.1186/s12861-018-0163-7.

Deepti Vipin, Lingfei Wang, Guillaume Devailly, Tom Michoel, Anagha Joshi (2018). Causal Transcription Regulatory Network Inference Using Enhancer Activity as a Causal Anchor. In: International Journal of Molecular Sciences, (19), 11, https://doi.org/10.3390/ijms19113609.

Pia Francesca Loren Reyes, Tom Michoel, Anagha Joshi, Guillaume Devailly (2017). Meta-analysis of Liver and Heart Transcriptomic Data for Functional Annotation Transfer in Mammalian Orthologs. In: Computational and Structural Biotechnology Journal, (15), pp. 425–432, https://doi.org/10.1016/j.csbj.2017.08.002.

P. Mathot, M. Grandin, G. Devailly, F. Souaze, V. Cahais, S. Moran, M. Campone, Z. Herceg, M. Esteller, P. Juin, P. Mehlen, R. Dante (2017). DNA methylation signal has a major role in the response of human breast cancer cells to the microenvironment. In: Oncogenesis, (6), 10, pp. e390, https://doi.org/10.1038/oncsis.2017.88.

Angeles Arzalluz-Luque, Guillaume Devailly, Anna Mantsoki, Anagha Joshi (2017). Delineating biological and technical variance in single cell expression data. In: The International Journal of Biochemistry & Cell Biology, (90), pp. 161–166, https://doi.org/10.1016/j.biocel.2017.07.006.

A. Griveau, G. Devailly, L. Eberst, N. Navaratnam, B. {Le Calve}, M. Ferrand, P. Faull, A. Augert, R. Dante, J. M. Vanacker, D. Vindrieux, D. Bernard (2016). The PLA2R1-JAK2 pathway upregulates ERRα and its mitochondrial program to exert tumor-suppressive action. In: Oncogene, (35), 38, pp. 5033–5042, https://doi.org/10.1038/onc.2016.43.

Melodie Grandin, Pauline Mathot, Guillaume Devailly, Yannick Bidet, Akram Ghantous, Clementine Favrot, Benjamin Gibert, Nicolas Gadot, Isabelle Puisieux, Zdenko Herceg, Jean-Guy Delcros, Agnes Bernet, Patrick Mehlen, Robert Dante (2016). Inhibition of DNA methylation promotes breast tumor sensitivity to netrin-1 interference. In: EMBO molecular medicine, (8), 8, pp. 863–877, https://doi.org/10.15252/emmm.201505945.

Guillaume Devailly, Anna Mantsoki, Anagha Joshi (2016). Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data. In: Bioinformatics (Oxford, England), (32), 21, pp. 3354–3356, https://doi.org/10.1093/bioinformatics/btw407.

Anna Mantsoki, Guillaume Devailly, Anagha Joshi (2016). Gene expression variability in mammalian embryonic stem cells using single cell RNA-seq data. In: Computational Biology and Chemistry, (63), pp. 52–61, https://doi.org/10.1016/j.compbiolchem.2016.02.004.

Guillaume Devailly, Anna Mantsoki, Tom Michoel, Anagha Joshi (2015). Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource. In: FEBS letters, (589), 24 Pt B, pp. 3866–3870, https://doi.org/10.1016/j.febslet.2015.11.027.

Roxane M. Pommier, Johann Gout, David F. Vincent, Lindsay B. Alcaraz, Nicolas Chuvin, Vanessa Arfi, Sylvie Martel, Bastien Kaniewski, Guillaume Devailly, Genevieve Fourel, Pascal Bernard, Caroline Moyret-Lalle, Stephane Ansieau, Alain Puisieux, Ulrich Valcourt, Stephanie Sentis, Laurent Bartholin (2015). TIF1γ Suppresses Tumor Progression by Regulating Mitotic Checkpoints and Chromosomal Stability. In: Cancer Research, (75), 20, pp. 4335–4350, https://doi.org/10.1158/0008-5472.CAN-14-3426.

Guillaume Devailly, Melodie Grandin, Laury Perriaud, Pauline Mathot, Jean-Guy Delcros, Yannick Bidet, Anne-Pierre Morel, Jean-Yves Bignon, Alain Puisieux, Patrick Mehlen, Robert Dante (2015). Dynamics of MBD2 deposition across methylated DNA regions during malignant transformation of human mammary epithelial cells. In: Nucleic Acids Research, (43), 12, pp. 5838–5854, https://doi.org/10.1093/nar/gkv508.

Anna Mantsoki, Guillaume Devailly, Anagha Joshi (2015). CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells. In: Scientific Reports, (5), pp. 16791, https://doi.org/10.1038/srep16791.

David Vindrieux, Guillaume Devailly, Arnaud Augert, Benjamin {Le Calve}, Mylene Ferrand, Pascal Pigny, Lea Payen, Gerard Lambeau, Michael Perrais, Sebastien Aubert, Helene Simonnet, Robert Dante, David Bernard (2014). Repression of PLA2R1 by c-MYC and HIF-2alpha promotes cancer growth. In: Oncotarget, (5), 4, pp. 1004–1013, https://doi.org/10.18632/oncotarget.1681.

Andrea Paradisi, Marion Creveaux, Benjamin Gibert, Guillaume Devailly, Emeline Redoulez, David Neves, Elsa Cleyssac, Isabelle Treilleux, Christian Klein, Gerhard Niederfellner, Philippe A. Cassier, Agnes Bernet, Patrick Mehlen (2013). Combining chemotherapeutic agents and netrin-1 interference potentiates cancer cell death. In: EMBO molecular medicine, (5), 12, pp. 1821–1834, https://doi.org/10.1002/emmm.201302654.