(2021). Comprehensive analysis of epigenetic signatures of human transcription control. In: Molecular Omics, (17), 5, pp. 692–705,

Preprint Project

(2019). Transcript Analysis Reveals a Hypoxic Inflammatory Environment in Human Chronic Otitis Media With Effusion. In: Frontiers in Genetics, (10), pp. 1327,

(2018). scFeatureFilter: Correlation-Based Feature Filtering for Single-Cell RNAseq. In: Bioinformatics and Biomedical Engineering, Springer International Publishing, Cham, pp. 364–370.

(2018). Insights into mammalian transcription control by systematic analysis of ChIP sequencing data. In: BMC bioinformatics, (19), Suppl 14, pp. 409,

(2018). Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells. In: BMC developmental biology, (18), 1, pp. 2,

(2018). Causal Transcription Regulatory Network Inference Using Enhancer Activity as a Causal Anchor. In: International Journal of Molecular Sciences, (19), 11,

(2017). Meta-analysis of Liver and Heart Transcriptomic Data for Functional Annotation Transfer in Mammalian Orthologs. In: Computational and Structural Biotechnology Journal, (15), pp. 425–432,

(2017). DNA methylation signal has a major role in the response of human breast cancer cells to the microenvironment. In: Oncogenesis, (6), 10, pp. e390,

(2017). Delineating biological and technical variance in single cell expression data. In: The International Journal of Biochemistry & Cell Biology, (90), pp. 161–166,

(2016). The PLA2R1-JAK2 pathway upregulates ERRα and its mitochondrial program to exert tumor-suppressive action. In: Oncogene, (35), 38, pp. 5033–5042,

(2016). Inhibition of DNA methylation promotes breast tumor sensitivity to netrin-1 interference. In: EMBO molecular medicine, (8), 8, pp. 863–877,

(2016). Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data. In: Bioinformatics (Oxford, England), (32), 21, pp. 3354–3356,

(2016). Gene expression variability in mammalian embryonic stem cells using single cell RNA-seq data. In: Computational Biology and Chemistry, (63), pp. 52–61,

(2015). Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource. In: FEBS letters, (589), 24 Pt B, pp. 3866–3870,

(2015). TIF1γ Suppresses Tumor Progression by Regulating Mitotic Checkpoints and Chromosomal Stability. In: Cancer Research, (75), 20, pp. 4335–4350,

(2015). Dynamics of MBD2 deposition across methylated DNA regions during malignant transformation of human mammary epithelial cells. In: Nucleic Acids Research, (43), 12, pp. 5838–5854,

(2014). Repression of PLA2R1 by c-MYC and HIF-2alpha promotes cancer growth. In: Oncotarget, (5), 4, pp. 1004–1013,

(2013). Combining chemotherapeutic agents and netrin-1 interference potentiates cancer cell death. In: EMBO molecular medicine, (5), 12, pp. 1821–1834,