Publications

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. Transcript Analysis Reveals a Hypoxic Inflammatory Environment in Human Chronic Otitis Media With Effusion. In: Frontiers in Genetics, (10), https://doi.org/10.3389/fgene.2019.01327, https://doi.org/10.3389/fgene.2019.01327, 2020.

. Insights into mammalian transcription control by systematic analysis of ChIP sequencing data. In: BMC bioinformatics, (19), Suppl 14, pp. 409, https://doi.org/10.1186/s12859-018-2377-x, 2018.

. Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells. In: BMC developmental biology, (18), 1, pp. 2, https://doi.org/10.1186/s12861-018-0163-7, 2018.

. Causal Transcription Regulatory Network Inference Using Enhancer Activity as a Causal Anchor. In: International Journal of Molecular Sciences, (19), 11, https://doi.org/10.3390/ijms19113609, 2018.

. Meta-analysis of Liver and Heart Transcriptomic Data for Functional Annotation Transfer in Mammalian Orthologs. In: Computational and Structural Biotechnology Journal, (15), pp. 425–432, https://doi.org/10.1016/j.csbj.2017.08.002, 2017.

. Delineating biological and technical variance in single cell expression data. In: The International Journal of Biochemistry & Cell Biology, (90), pp. 161–166, https://doi.org/10.1016/j.biocel.2017.07.006, 2017.

. DNA methylation signal has a major role in the response of human breast cancer cells to the microenvironment. In: Oncogenesis, (6), 10, pp. e390, https://doi.org/10.1038/oncsis.2017.88, 2017.

. The PLA2R1-JAK2 pathway upregulates ERRα and its mitochondrial program to exert tumor-suppressive action. In: Oncogene, (35), 38, pp. 5033–5042, https://doi.org/10.1038/onc.2016.43, 2016.

. Inhibition of DNA methylation promotes breast tumor sensitivity to netrin-1 interference. In: EMBO molecular medicine, (8), 8, pp. 863–877, https://doi.org/10.15252/emmm.201505945, 2016.

. Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data. In: Bioinformatics (Oxford, England), (32), 21, pp. 3354–3356, https://doi.org/10.1093/bioinformatics/btw407, 2016.

. Gene expression variability in mammalian embryonic stem cells using single cell RNA-seq data. In: Computational Biology and Chemistry, (63), pp. 52–61, https://doi.org/10.1016/j.compbiolchem.2016.02.004, 2016.

. Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource. In: FEBS letters, (589), 24 Pt B, pp. 3866–3870, https://doi.org/10.1016/j.febslet.2015.11.027, 2015.

. TIF1γ Suppresses Tumor Progression by Regulating Mitotic Checkpoints and Chromosomal Stability. In: Cancer Research, (75), 20, pp. 4335–4350, https://doi.org/10.1158/0008-5472.CAN-14-3426, 2015.

. Dynamics of MBD2 deposition across methylated DNA regions during malignant transformation of human mammary epithelial cells. In: Nucleic Acids Research, (43), 12, pp. 5838–5854, https://doi.org/10.1093/nar/gkv508, 2015.

. CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells. In: Scientific Reports, (5), pp. 16791, https://doi.org/10.1038/srep16791, 2015.

. Repression of PLA2R1 by c-MYC and HIF-2alpha promotes cancer growth. In: Oncotarget, (5), 4, pp. 1004–1013, https://doi.org/10.18632/oncotarget.1681, 2014.

. Combining chemotherapeutic agents and netrin-1 interference potentiates cancer cell death. In: EMBO molecular medicine, (5), 12, pp. 1821–1834, https://doi.org/10.1002/emmm.201302654, 2013.